mdvtools.dbutils.dbmodels

Attributes

db

Classes

`User`
`Project`
`File`
`UserProject`
`Genome`
`Job`
`Permission`
`SharedObject`
`UserPreference`
`ViewSet`
`GeneSet`

Module Contents

mdvtools.dbutils.dbmodels.db[source]

class mdvtools.dbutils.dbmodels.User[source]

Bases: db

__tablename__ = 'users'[source]

id[source]

email[source]

confirmed_at[source]

password[source]

is_active[source]

first_name[source]

last_name[source]

administrator[source]

institution[source]

projects[source]

jobs[source]

permissions[source]

preferences[source]

class mdvtools.dbutils.dbmodels.Project[source]

Bases: db

__tablename__ = 'projects'[source]

id[source]

name[source]

path[source]

created_timestamp[source]

is_deleted[source]

deleted_timestamp[source]

update_timestamp[source]

accessed_timestamp[source]

owner[source]

type[source]

data[source]

is_public[source]

date_made_public[source]

status[source]

genome[source]

parent[source]

description[source]

access_level[source]

users[source]

files[source]

__table_args__[source]

class mdvtools.dbutils.dbmodels.File[source]

Bases: db

__tablename__ = 'files'[source]

id[source]

name[source]

file_path[source]

upload_timestamp[source]

update_timestamp[source]

project_id[source]

class mdvtools.dbutils.dbmodels.UserProject[source]

Bases: db

__tablename__ = 'user_projects'[source]

id[source]

user_id[source]

project_id[source]

can_read[source]

can_write[source]

class mdvtools.dbutils.dbmodels.Genome[source]

Bases: db

__tablename__ = 'genomes'[source]

id[source]

name[source]

label[source]

data[source]

database[source]

date_added[source]

connections[source]

icon[source]

is_public[source]

chrom_sizes[source]

small_icon[source]

projects[source]

class mdvtools.dbutils.dbmodels.Job[source]

Bases: db

__tablename__ = 'jobs'[source]

id[source]

inputs[source]

user_id[source]

outputs[source]

sent_on[source]

status[source]

class_name[source]

genome[source]

finished_on[source]

is_deleted[source]

type[source]

class mdvtools.dbutils.dbmodels.Permission[source]

Bases: db

__tablename__ = 'permissions'[source]

id[source]

user_id[source]

permission[source]

value[source]

class mdvtools.dbutils.dbmodels.SharedObject[source]

Bases: db

__tablename__ = 'shared_objects'[source]

id[source]

owner[source]

shared_with[source]

object_id[source]

date_shared[source]

level[source]

class mdvtools.dbutils.dbmodels.UserPreference[source]

Bases: db

__tablename__ = 'user_preferences'[source]

id[source]

preference[source]

data[source]

user_id[source]

class mdvtools.dbutils.dbmodels.ViewSet[source]

Bases: db

__tablename__ = 'view_sets'[source]

id[source]

table_name[source]

name[source]

description[source]

date_added[source]

date_modified[source]

owner[source]

is_public[source]

fields[source]

data[source]

date_made_public[source]

status[source]

is_deleted[source]

class mdvtools.dbutils.dbmodels.GeneSet[source]

Bases: db

__tablename__ = 'gene_sets'[source]

id[source]

name[source]

table_name[source]

data[source]

date_added[source]

date_modified[source]

is_deleted[source]

description[source]