mdvtools.spatial

Functions

add_centroid_plots(project, datasource, split_by[, ...])
create_interaction_matrix_view(project, ...[, ...])
create_roi_interaction_view(project, datasource[, ...])

Module Contents

mdvtools.spatial.add_centroid_plots(project, datasource, split_by, ignore_values=[], scale=0.5)

mdvtools.spatial.create_interaction_matrix_view(project, interaction_datasource, exclude_groups=[], name='interaction view', cells_datasource='cells', interaction_metrics=['gr20'], square_size=20, images='pcf charts', selections=[{'column': 'MH_FDR', 'filter': [None, 0.05]}, {'column': 'MH_PC', 'filter': [0, None]}])

mdvtools.spatial.create_roi_interaction_view(project, datasource, lchm=None, pcfs='pcf charts', cells_datasource='cells', extra_filters=[], table_metrics=['gr20'], name='roi interaction view')