Class AlignmentContainer

constructor

• new AlignmentContainer(
      chr: any,
      start: any,
      end: any,
      samplingWindowSize: any,
      samplingDepth: any,
      pairsSupported: any,
      parent: any,
  ): AlignmentContainer

• Parameters

  • chr: any
  • start: any
  • end: any
  • samplingWindowSize: any
  • samplingDepth: any
  • pairsSupported: any
  • parent: any

  Returns AlignmentContainer

alignments

chr

coverageMap

currentBucket

downsampledIntervals

downsampledReads

end

filter

length

paired

pairsCache

pairsSupported

parent

raw_alignments

samplingDepth

samplingWindowSize

start

contains

• contains(chr: any, start: any, end: any): boolean

• Parameters

  • chr: any
  • start: any
  • end: any

  Returns boolean

finish

• finish(): void

• Returns void

forEach

• forEach(callback: any): void

• Parameters

  • callback: any

  Returns void

hasDownsampledIntervals

• hasDownsampledIntervals(): boolean

• Returns boolean

push

• push(alignment: any): void

• Parameters

  • alignment: any

  Returns void