Class BamAlignment

constructor

• new BamAlignment(): BamAlignment

• Returns BamAlignment

hidden

tagBA

tagDict

isDuplicate

• isDuplicate(): boolean

• Returns boolean

isFailsVendorQualityCheck

• isFailsVendorQualityCheck(): boolean

• Returns boolean

isFirstOfPair

• isFirstOfPair(): boolean

• Returns boolean

isMapped

• isMapped(): boolean

• Returns boolean

isMateMapped

• isMateMapped(): boolean

• Returns boolean

isMateNegativeStrand

• isMateNegativeStrand(): boolean

• Returns boolean

isNegativeStrand

• isNegativeStrand(): boolean

• Returns boolean

isPaired

• isPaired(): boolean

• Returns boolean

isProperPair

• isProperPair(): boolean

• Returns boolean

isSecondary

• isSecondary(): boolean

• Returns boolean

isSecondOfPair

• isSecondOfPair(): boolean

• Returns boolean

isSupplementary

• isSupplementary(): boolean

• Returns boolean

popupData

• popupData(
      genomicLocation: any,
  ): (
      | string
      | { borderTop?: undefined; name: string; value: any }
      | { borderTop: boolean; name: string; value: any }
  )[]

• Parameters

  • genomicLocation: any

  Returns (
      | string
      | { borderTop?: undefined; name: string; value: any }
      | { borderTop: boolean; name: string; value: any }
  )[]

tags

• tags(): {}

• Returns {}