Class BamFeatureReader

constructor

• new BamFeatureReader(config: any): BamFeatureReader

• Parameters

  • config: any

  Returns BamFeatureReader

alignmentBuffer

alignments

baiPath

bamPath

catData

catNames

chrToIndex

config

cut_window

features

filter

fragmentThreshold

headPath

indexToChr

localFilter

pointer

store

addAlignments

• addAlignments(ba: any, offset: any, min: any, max: any, chrId: any): void

• Parameters

  • ba: any
  • offset: any
  • min: any
  • max: any
  • chrId: any

  Returns void

calculateCategories

• calculateCategories(): void

• Returns void

calculateFragmentSize

• calculateFragmentSize(): void

• Returns void

getAlignments

• getAlignments(chr: any, bpStart: any, bpEnd: any): Promise<any[]>

• Parameters

  • chr: any
  • bpStart: any
  • bpEnd: any

  Returns Promise<any[]>

getIdsInRange

• getIdsInRange(range: any): Set<any>

• Parameters

  • range: any

  Returns Set<any>

readHeader

• readHeader(): Promise<void>

• Returns Promise<void>

setCategories

• setCategories(data: any, names: any): void

• Parameters

  • data: any
  • names: any

  Returns void

setFilter

• setFilter(arr: any, arr2: any): void

• Parameters

  • arr: any
  • arr2: any

  Returns void