Class AlignmentTrack

constructor

• new AlignmentTrack(config: any, parent: any): AlignmentTrack

• Parameters

  • config: any
  • parent: any

  Returns AlignmentTrack

alignmentRowHeight

bamColorTag

colorBy

colorByTag

config

deletionColor

featureSource

hasPairs

insertionColor

negStrandColor

parent

posStrandColor

skippedColor

sortDirection

sortOption

computePixelHeight

• computePixelHeight(alignmentContainer: any): any

• Parameters

  • alignmentContainer: any

  Returns any

draw

• draw(options: any): any

• Parameters

  • options: any

  Returns any

getAlignmentColor

• getAlignmentColor(alignment: any): any

• Parameters

  • alignment: any

  Returns any

popupData

• popupData(genomicLocation: any, xOffset: any, yOffset: any): any

• Parameters

  • genomicLocation: any
  • xOffset: any
  • yOffset: any

  Returns any

sortAlignmentRows

• sortAlignmentRows(genomicLocation: any, sortOption: any): void

• Parameters

  • genomicLocation: any
  • sortOption: any

  Returns void

StaticdoSortAlignmentRows

• doSortAlignmentRows(
      genomicLocation: any,
      genomicInterval: any,
      sortOption: any,
      sortDirection: any,
  ): void

• Parameters

  • genomicLocation: any
  • genomicInterval: any
  • sortOption: any
  • sortDirection: any

  Returns void