Class SimpleBrowser

constructor

• new SimpleBrowser(parent_div: string, config: Object): SimpleBrowser

• Creates a filter panel

  Parameters

  • parent_div: string

    The id of the div element to house the browser
  • config: Object

    config of how the browser is constructed

    • add_controls - if true then a control bar is added (default false)
    • add_ruler - if true a ruler track will be added (default false)

  Returns SimpleBrowser

bp_per_pixel

chr

end

panels

start

_addHandlers

• _addHandlers(): void

• Returns void

_isLoading

• _isLoading(): boolean

• Returns boolean

_positionChanged

• _positionChanged(chr: any, start: any, end: any): void

• Parameters

  • chr: any
  • start: any
  • end: any

  Returns void

_translateCoOrds

• _translateCoOrds(e: any): { x: number; y: number }

• Parameters

  • e: any

  Returns { x: number; y: number }

addListener

• addListener(type: any, func: any): void

• Parameters

  • type: any
  • func: any

  Returns void

addPanel

• addPanel(
      id: string,
      track_config: Object[],
      top: number,
      height: number,
      pan_config: any,
  ): void

• Adds a panel to the browser Creates a filter panel

  Parameters

  • id: string

    The id of track
  • track_config: Object[]

    The config describing the tracks in the panel
  • top: number

    The position of the top of the panel(in pixels)
  • height: number

    The height of the panel (in pixels)
  • pan_config: any

  Returns void

addTrackFromBrowser

• addTrackFromBrowser(config: any, update: any): void

• Parameters

  • config: any
  • update: any

  Returns void

getPosition

• getPosition(): { chr: string; end: number; start: number }

• Returns { chr: string; end: number; start: number }

getState

• getState(): { config: any; height: any; id: string; pan_config: any; top: any }[]

• Returns { config: any; height: any; id: string; pan_config: any; top: any }[]

goToPosition

• goToPosition(chr: string, start: number, end: number): void

• Displays the specified genomic location

  Parameters

  • chr: string

    chromosome
  • start: number

    The start of the genomic location
  • end: number

    The end of the genomic location

  Returns void

removeHighlightedRegion

• removeHighlightedRegion(name: any): void

• Parameters

  • name: any

  Returns void

removePanel

• removePanel(id: any): void

• Parameters

  • id: any

  Returns void

setHighlightedRegion

• setHighlightedRegion(location: any, name: any, color: any): void

• Parameters

  • location: any
  • name: any
  • color: any

  Returns void

setState

• setState(state: any): void

• Parameters

  • state: any

  Returns void

setWidth

• setWidth(): void

• Returns void

zoom

• zoom(amount: any): void

• Parameters

  • amount: any

  Returns void