Class UCSCMLVTrack

Hierarchy (View Summary)

Constructors

constructor

Properties

bottom color_function config image legend_width top custom_tracks

Methods

_convertURL _setFeatureSource addExtraControls drawFeatures drawMessage drawScale getConfig getFeatureAt getFeatures getSettings setColorFunction setConfig setConfigAttribute _convertSessionURL calculateLabel getTrack getTypeFromURL parseConfig

Constructors

constructor

Properties

bottom

bottom: any

color_function

color_function: any

config

config: any

image

image: any

legend_width

legend_width: number

top

top: any

Staticcustom_tracks

custom_tracks: {}

Methods

_convertURL

_setFeatureSource

addExtraControls

drawFeatures

drawMessage

drawScale

getConfig

getFeatureAt

  • getFeatureAt(
        genomicLocation: any,
        chr: any,
        yOffset: any,
        bpPerPixel: any,
    ): null

  • Parameters

    • genomicLocation: any
    • chr: any
    • yOffset: any
    • bpPerPixel: any

    Returns null

getFeatures

  • getFeatures(
        chr: any,
        bpStart: any,
        bpEnd: any,
        force: any,
        data: any,
    ): Promise<any>

  • Retrieves the features requested, the default is just to get the features from the feature source

    Parameters

    • chr: any

      The chromosome

    • bpStart: any

      The start of the range from which to obtain features

    • bpEnd: any

      The end of the range from which to obtain features

    • force: any

      If true then cached features should not be used but fresh features retrieved

    • data: any

      contains bp ber pixel and width of the canvas

    Returns Promise<any>

getSettings

  • getSettings(
        panel: any,
    ): (
        | {
            current_value: any;
            func: (x: any) => void;
            label: string;
            max?: undefined;
            min?: undefined;
            type: string;
        }
        | {
            current_value: any;
            func: (x: any) => void;
            label: string;
            max: number;
            min: number;
            type: string;
        }
        | {
            current_value?: undefined;
            func: () => void;
            label: string;
            max?: undefined;
            min?: undefined;
            type: string;
        }
    )[]

  • Parameters

    • panel: any

    Returns (
        | {
            current_value: any;
            func: (x: any) => void;
            label: string;
            max?: undefined;
            min?: undefined;
            type: string;
        }
        | {
            current_value: any;
            func: (x: any) => void;
            label: string;
            max: number;
            min: number;
            type: string;
        }
        | {
            current_value?: undefined;
            func: () => void;
            label: string;
            max?: undefined;
            min?: undefined;
            type: string;
        }
    )[]

setColorFunction

setConfig

setConfigAttribute

Static_convertSessionURL

StaticcalculateLabel

StaticgetTrack

StaticgetTypeFromURL

StaticparseConfig

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