Class BamSCATrack

constructor

• new BamSCATrack(config: any): BamSCATrack

• Parameters

  • config: any

  Returns BamSCATrack

catColors

catNames

catNumbers

feature_source

numbers

top

addIndex

• addIndex(index: any): void

• Parameters

  • index: any

  Returns void

drawFeatures

• drawFeatures(options: any): void

• Parameters

  • options: any

  Returns void

drawScale

• drawScale(height: any, ctx: any, defaultColor: any): void

• Parameters

  • height: any
  • ctx: any
  • defaultColor: any

  Returns void

filterReads

• filterReads(filter: any, localFilter: any): void

• Parameters

  • filter: any
  • localFilter: any

  Returns void

getFeatures

• getFeatures(
      chr: any,
      bpStart: any,
      bpEnd: any,
      force: any,
      data: any,
  ): Promise<any>

• Retrieves the features requested, the default is just to get the features from the feature source

  Parameters

  • chr: any

    The chromosome
  • bpStart: any

    The start of the range from which to obtain features
  • bpEnd: any

    The end of the range from which to obtain features
  • force: any

    If true then cached features should not be used but fresh features retrieved
  • data: any

    contains bp ber pixel and width of the canvas

  Returns Promise<any>

getIdsInRange

• getIdsInRange(range: any): Set<any>

• Parameters

  • range: any

  Returns Set<any>

getSettings

• getSettings(
      panel: any,
  ): (
      | {
          current_value: any;
          func: (x: any) => void;
          label: string;
          max?: undefined;
          min?: undefined;
          type: string;
      }
      | {
          current_value: any;
          func: (x: any) => void;
          label: string;
          max: number;
          min: number;
          type: string;
      }
      | {
          current_value?: undefined;
          func: () => void;
          label: string;
          max?: undefined;
          min?: undefined;
          type: string;
      }
  )[]

• Parameters

  • panel: any

  Returns (
      | {
          current_value: any;
          func: (x: any) => void;
          label: string;
          max?: undefined;
          min?: undefined;
          type: string;
      }
      | {
          current_value: any;
          func: (x: any) => void;
          label: string;
          max: number;
          min: number;
          type: string;
      }
      | {
          current_value?: undefined;
          func: () => void;
          label: string;
          max?: undefined;
          min?: undefined;
          type: string;
      }
  )[]

setCategories

• setCategories(
      col: any,
      data: Uint8Array,
      names: any[],
      colors: any[],
      calculate?: boolean,
      overideCatNumbers?: boolean,
  ): void

• sets the categories with

  Parameters

  • col: any
  • data: Uint8Array

    The array holding the data
  • names: any[]

    a list of names
  • colors: any[]

    an array of colors
  • calculate: boolean = false
  • overideCatNumbers: boolean = false

  Returns void

setFragmentSizeFilter

• setFragmentSizeFilter(on: any, size: any): void

• Parameters

  • on: any
  • size: any

  Returns void